Scaffold Ga0181577_10002114

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10002114
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15704
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED167 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015281	Metagenome	256	N
F031857	Metagenome / Metatranscriptome	181	N
F067700	Metagenome / Metatranscriptome	125	N
F073492	Metagenome / Metatranscriptome	120	N
F082630	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100021141	F015281	GAG	MTITSNQTNAKTSKSKRLLGISDVAQKLDMSYHEARNFLVRVPVAETGERGAHLYRLEDITNAREANAIEAGNQALPGTKEWHEVEKIRRQVEKLDVELEGMRGKVLDREDVRAGVMAICQEFAKHLDEQEAKLPPLVAGLTPTEAQPIIAQYNTKVRDALSKYAANY
Ga0181577_1000211410	F031857	N/A	MALNRIINTRSGWLYETALHDTPTTFTTIGEGGTFGAGNVIIRVTADAAQYDAAAYTVQRTNESGEWEDVYTITLNVPDGRGITRTDCFHSVAHSNPVPHTNFQEQYIIDQGHHRSRFLYEQQVDLERTAGSVFDYHGNVLRCVESGNTETKELEDGGILEGYDLTLTTNRKQWADAGIKPIVGATLTKGGKRFKIQQVLTNDASFELGLMKKQ
Ga0181577_1000211412	F073492	N/A	MSYRKQTEQAFKAYLQGKVGVPVYAGTNDTIKAMPCVVVAFVGANQNPPNTGNMDVTLSISVQSEIDEDGQPNALDVHDEILSAVEDSLFWPSLQAINTTATDLHVFGVSEHSGIERDVEGTMLRESITLTIPAALGNF
Ga0181577_1000211420	F067700	N/A	MAESWGEWFKVPLVGVIGFSITGSTIDEWLRIGIAIATLVYTIAKAGSAVIEFKRKRNEKRN
Ga0181577_1000211421	F082630	GAG	MKNAIEIGFLATALFMLSGCAALEQATGWAYEAEVTTQVLPDGSEQSVTNWVTKPNVKTGITIGGQLAPQPVGSIASQAIIALLGIGAAIRGRQWKKAAVSGVEAAQEFKAALNKSNAKGKLDGILGNLKTQQKAAGTWGLIKSILGKL