Scaffold Ga0181607_10250885

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10250885
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1015
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015209	Metagenome	256	N
F015472	Metagenome	254	Y
F056602	Metagenome	137	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_102508851	F015209	N/A	MNNYRHKALSLWSALLAEERWHQFENTNCKPSCKGWNGWAPYCECFENHCTFVPKGNIKDMELVVVAKPIDDVLRDINIIP
Ga0181607_102508852	F056602	GGTGG	MSNWTKGFIGVAIASQVILFVILFGCKAGDAFYITGVDMFGIVLSSICTLLYIPAILVSHDSDKIRKKLDEQLQA
Ga0181607_102508853	F015472	AGGAGG	MAHYYLNNGGTRWVTDNKIRVVGDVNGKQYNKMRQPMFWEALGNFALCYVRVGRTVYRGFSEDNNGVIELNLGKCVVVR
Ga0181607_102508854	F074878	N/A	YTIAMNTTDIVIVKFRSRSPRMLYSAYYNGILLASGSNAQELGEDYARKYGTEWVLQDGNKFYTQGGVK