Scaffold Ga0181607_10163009

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10163009
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1342
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009463	Metagenome / Metatranscriptome	317	Y
F012129	Metagenome / Metatranscriptome	283	Y
F013249	Metagenome / Metatranscriptome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_101630091	F009463	N/A	DGENQDGTLKYKTKIDGRSYKISFDVNKNPTKKGIKVKFFPLDENGNEIQTPSEEQLAQLQNDVATRLAPKFNEYKLEFDEDEDAPERNVAAFQVPLSSFVSFVANVVFKA
Ga0181607_101630092	F013249	AGG	MAKRKLINLRVIGNSSKLLNEFIDNNKAYIFKETYAGIKHAIRQNKSVAEICNVNTNSAVAIITKDGWENALSSSLGYFESVDEFEMCRDINTTLKTLRNVTRSTKLSKAISGSAIAS
Ga0181607_101630093	F012129	N/A	MSQDPLNSLKQSLDQLLQADTSIKRKNKKSYDQKRDLFINVVNQFEYAITKSYLLEKDFKIDMSKYEENFYQIIDSLVLLAFGKDIYELLSFYFYERYNPDGSENGLIIDETEEEIFVKDATELWDLIIRVKPDIFDGKTG