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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017950 Open in IMG/M |
| Scaffold ID | Ga0181607_10088570 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1980 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025038 | Metagenome / Metatranscriptome | 203 | N |
| F048992 | Metagenome | 147 | N |
| F054022 | Metagenome | 140 | N |
| F054882 | Metagenome / Metatranscriptome | 139 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181607_100885701 | F054882 | N/A | EKDIYNRELDMYDVETNIKAARWLSYYDGWHHWNSSKHCWGRYDRS |
| Ga0181607_100885702 | F025038 | N/A | MMVGIIGTVVNIVGVDMTEVNKNNRRLFVEDEYDLYDVRKARPFWNDVCEVNGWEIIKDEEDFREDYVCKINNELYFMELQVVAYWHNFDLSKISNVRISASKINLLREKDNGGLIFLNCVPNRFFAINVNQVTPEMKKDSVREQFYEIPLKTINPREVNVLDTNYCDCLENHLPIMKRSGGRMAFGQKDYNIRGANGICC |
| Ga0181607_100885703 | F048992 | AGGGGG | MEYAADDINYGYMSILMQINSEYTLIDKIQNIREIDGSIEHPIFGTNKGGVTFTLFLRGFYTVFEAVMNFGNRFDVYVVNEQGNTTMIDEDLDHLISLLHILYINKKAEEDELLNRALNPHTYRKVAKKMFYNEDPPF |
| Ga0181607_100885704 | F054022 | N/A | MKIPHFKKGLKVQFVEAATDFIDPPTQDILWRYGKILFQVKSEHGAISYYIEENKKKVKVSRYLIFPVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |