NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181607_10084069

Scaffold Ga0181607_10084069


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10084069 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2047
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008190Metagenome / Metatranscriptome337Y
F046982Metagenome / Metatranscriptome150N
F056630Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0181607_100840691F056630N/AMQKDKTEKVQEKVYYQWIKGDNSGNVVTIKDTDDKWINFNEGGRLAKDLQDEFIQLLDEDIAGEFIKPPVSNDPLNVSAKEKTTLVETALSTTPNPIRVLFNKQKKNNKVKLLLEFPVNIPQKAVYELMSTSFDKGEVNDVLQSFILDQLSEDEILDCLHNSVQSLIESKYKGE
Ga0181607_100840694F008190AGGAMEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMRQLQNAINRNISTTIFYVLGNLNKETVGGIQEYVESLSSKPITYKIYHSPDIMVNGTAEL
Ga0181607_100840695F046982N/AMKTHRIFNKGQNVYCLLASHTNPNILLPVKGKIIDSKWDPVNPLYQIRIIKFYDSMKFLKKHFFDMNFRHVFENRARKMILKAEDYKTAKVLEERLNEKDRERFYVIVESVMCKKTK

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