Scaffold Ga0181607_10072299

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10072299
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2253
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026437	Metagenome / Metatranscriptome	198	Y
F048641	Metagenome / Metatranscriptome	148	Y
F064194	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100722992	F048641	GGAGG	MIDVKRKIHIDLVALYDLAYQNDLPEICGALSNVEHMVWELRRREDKEGEKA
Ga0181607_100722994	F026437	AGGAGG	MKYYIGNIDEQYGEFEVEQSFLFATDGDADQLMEELAKDWYGQDEHDSEGLPEGMYWNHYEMAYGAGRHFEVTKATYDELKDKRVFTEIYSGEEPKYDRTPKTFQEMDND
Ga0181607_100722995	F064194	GGAG	MKTYLVEISAVVWKQIEVRAESVEAADKLAHELFDLATDGCPEWISLRHDQETRMIWVDDSPSIRNWKEVT