Scaffold Ga0181607_10068200

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10068200
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2336
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001607	Metagenome / Metatranscriptome	664	Y
F001614	Metagenome / Metatranscriptome	663	Y
F063490	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100682001	F001614	N/A	TAIAACLYARARVAEFERSVHDLDWQQVSELSLDVAKLKKASQKWQNNMNAQEAVSLKNLKEQALMQTLMQQNGSVQPIRKVEM
Ga0181607_100682003	F001607	AGG	MPVLANNLSLTAGSQSVNVFDNTNYQFINEGTELRVSAAVVGANDGVQGANVNYRFTINNTEFADDAIVPALVTGEPFTDGAASYRTNSVIATGQARNRPLLVFRNQTAGTLIVKYYVFISQQV
Ga0181607_100682005	F063490	N/A	MVNFFGTYGGLICGFGGFLTAIAACLYARARVAEFERSVHDLDWQQVSELSLDVAKLKK