Scaffold Ga0181607

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10066195 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2379
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2379

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F003678	Metagenome / Metatranscriptome	474	Y
F059349	Metagenome / Metatranscriptome	134	Y
F102833	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100661952	F003678	GGA	MLYAPLIIASISLILCLYACMRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTMKNVGG
Ga0181607_100661953	F102833	GGCGG	MGLLDKIKSVAIPAAIGFATGGPAGAFAATVSAGEAEKAARKQQRLIEQNQREEQLLMSEIFGSNSYGLSNIQQPMSGQRAPTVNAGFGSSFGSFLGDVGSNIIGPLSGLFSQVRPFISQQSRGQPALPTLTNVGGQESQSSGVTQGFIGGIPNILGQASKFLRTPTGQIGTGLLTGIGGSMLAGGNGGMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDQFIMVLLKRFRNDGPVVTKAALRKTKSTVRRLKSMCDMYDSLRPTATRRKAPMRRASTTLISNK
Ga0181607_100661954	F000613	AGGAG	MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTAGTATADTTMDFNVNNAEFSKNASVSELVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG
Ga0181607_100661955	F059349	AGGTGG	MAQEFRINSTAIEDKINQLLPSQGGFGTGIDFSASTMVIPVVNLTEAAEGSSLREDLQAALSFGSVTSFNVANATTPIITTTGYWRVFGTMTSVDVANPS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181607_10066195

Overview

Ecosystem & Geography

Associated Families

Sequences