Scaffold Ga0181607_10056618

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10056618
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2629
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F009521	Metagenome / Metatranscriptome	316	Y
F044193	Metagenome	155	Y
F062678	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100566181	F044193	N/A	KDYFMFITVHHSLIEVSVHSYVDDDFEYRNKYIDYSVNEIYESICYRIDNNDLLEVA
Ga0181607_100566182	F009521	AGGTGG	MKYQIIINSGTLKGFIAFKGPCLATMQDKFKRLEQQGHKLKLIRGK
Ga0181607_100566186	F062678	AGGA	MPEINQNILKKLKRKYPGLPIVGSPKDWERIEKMLSKDDLKLYKLITKRGK
Ga0181607_100566189	F004603	N/A	MIFSININGNIVDWCYNLDCQDKQFHKTWIPKLSDIQIITKDLDGLTVSEVKKIILEDIQPDINMVKEHNNKLARARRMGR