NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181607_10044223

Scaffold Ga0181607_10044223


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10044223 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3075
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F042621Metagenome / Metatranscriptome158Y
F059985Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0181607_100442232F004606GAGMKAHRIFTKGQTVYCLLSSFSRPNVLLPVKGLIIDTQWDPINPLYKIRIIKMYDNMKYLKSHFFDMNFKYEFDNRARKMPLKKEDFRNVKSLEERFDENDRERFYVIVESVMCKKTKNDLLGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFDVRFKKGWSDKFKKGDIDIDKYLESLG
Ga0181607_100442233F008190N/AMETSIEFNFIYSKDAIKVKSFLGNVPRNIECINYMDIFNKLTKNDFYQHEPSDAVVSSYLMKQLQTILDRSTTTSIFYVLGNLNDHTIKGIKRYVESLTTKDIVYNIYHSPDINVNGSAKFFQNVVEFE
Ga0181607_100442234F059985AGAAGMVKIILEPARNGVIKRVVDDNHGGGKEQWTSVDVFEFNDDHKNKYEYIMRFFWELSEDLGLDCGNKFDKNVLKLKTEWGSHYEPNQKEIESKIKELQAEIDLLTEWKQV
Ga0181607_100442236F042621AGGAMENTEQERLQWIKGDKIGTVETVTGTEGEWTIFASGGRVSTNLIGEFLTPIQGEPMDFSDPPPNSALKEAAKTYKKNAVSLPMASPIRTLFDKQKKNDKIKLNLSFPIEVPKEAIYEIISSSFDLDEVNNELESFIVDQISDDFVKDSLMQSIKELISTRYKID
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