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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017950 Open in IMG/M |
| Scaffold ID | Ga0181607_10027645 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4152 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (33.33%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002528 | Metagenome / Metatranscriptome | 551 | Y |
| F038600 | Metagenome | 165 | Y |
| F046345 | Metagenome | 151 | N |
| F048960 | Metagenome | 147 | Y |
| F057323 | Metagenome | 136 | N |
| F073484 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181607_1002764511 | F057323 | N/A | MKILVLTIRAHGEEDDIYVFDNREVNVLPTIKEWLKENDIKLTLPDHVTDTYSFMDWFYDAENSLEIGTDFFVNLQYKELLSE |
| Ga0181607_1002764512 | F038600 | GAG | MSVTIYLTDHHGRKVAFFYRIDSERYSTAPQLIWCCRQHPEYQGRAESKEDFIEQCKSVMKELNKISQNNRST |
| Ga0181607_100276453 | F002528 | N/A | MKKKTQTPTTTTTLPSSEVDPTLPIIRIVSEEEEMHVKLELEMEDETHDMLVKWGKEVASDEDYINIALTDGLKHGISSDK |
| Ga0181607_100276456 | F048960 | N/A | MKPIKVINRIPTPADQIERETAKLFNTKLNKFLGYAFPLLCGLGWLLILLAIFSS |
| Ga0181607_100276457 | F046345 | N/A | MNIKINVREDSMGCLYLTPVKQSYIDQIIDYLKEFNVDSDGSVLIQSDYEVESFYEDCTYRQKKDIQSGWGANMLFDAWTFLNYVGWDACEGLELK |
| Ga0181607_100276459 | F073484 | GAG | MNALERSDMKINQPTENSLYVTIGNFTYYFDDSIEGECTVNRWHKDDDDINEPELFQTTEDE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |