Scaffold Ga0181607_10025270

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10025270
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4395
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F037471	Metagenome / Metatranscriptome	168	Y
F054424	Metagenome	140	Y
F070149	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1002527011	F054424	AGGAG	MKTFKVYTKWIGYSEIEVNAENEQEAKDFASMGLYKKELLTGKGLDYGYEDEQVYKVIDIEETEDE
Ga0181607_100252704	F002593	GGAG	MSKLIYSKNGSETTESIRNASPTIQAVWDQAHKFGANIVRVRSEKNRFGADTGRTFNSFHNGKVSVYKQKDQVHESNALYFAQKIPVTKANTGMQILEVASNLDVQDTLDTIDAIQYYSETSFLGRLWNRIRYGTPMSITA
Ga0181607_100252705	F037471	GGAG	MAQMRVKDQDLIIEQVVEKIEATELDKFKAREDVQSIQNVIEARIEIISKLVDQYKELEENIKADQKELEALVKSFQEANGFETALYYDNQGIKLQGVTYGFGVPTYELVWNLPHSTKRELSTKLRLQTMGGDFDVYKLIEELTAEFSS
Ga0181607_100252707	F070149	AGGAG	MQTIYHIVAEVCARDFPILARLSVNQGHKFIDIIYEDIISGDNPTEITEQQIFEYVEEFIAKAISVSIDDVVDVIEIKNDN