Scaffold Ga0181607_10024725

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10024725
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4457
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015461	Metagenome / Metatranscriptome	254	Y
F025231	Metagenome / Metatranscriptome	202	Y
F050274	Metagenome / Metatranscriptome	145	Y
F104749	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100247253	F050274	GGAG	MKHEKQARALIRKMIRRARQDWTTCVYVTPYGESEVLNEGQLERDIVNAVFSCDETTITFHDMTTGRNLGSVLVVLEYDRQPDEVISDYTDNPYTQRLIDLIGA
Ga0181607_100247254	F104749	GGA	MSNQLENNIRDGLTNHIAQFEASRDRLRAIHTAERESRAKARKRRAILQTVSDLIESVFMALGIFLSVAIVVTVLLFAAFGFTAPDGFGIQLPFCGYFWESI
Ga0181607_100247257	F015461	AGGAG	MENILAELKAIMQDAQEASARAGEYKNDIDRGINVNHTPEYDTSVTKQDKINSLFEYLIDAKDDMDRVKDSLKDIHDKLDDLLEVVEYENIAKGIR
Ga0181607_100247258	F025231	GGA	MEIRETYYELYLDGTLYHEGTLEDCTEYAQRALDDDCAEVYKVTVTEEKVVI