NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181607_10019305

Scaffold Ga0181607_10019305


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10019305 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5187
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008548Metagenome / Metatranscriptome331N
F025493Metagenome / Metatranscriptome201N
F027498Metagenome / Metatranscriptome194N
F027780Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0181607_1001930510F025493N/AITIEMCMVTTARYTQPELRHAMETLDDEVFYAVYRWIMENESHFEMMGVEMLGMTNSQSIGIATEVIEALLNFSQHTCQEEIKDYTANLVCFVDSAVYALLVNVSKEHFGARRFAKFIYTTLMNALKRDLLENLYVLI
Ga0181607_100193052F008548N/AMDILPLDLQCDILKRATLLDLKENPFKPKYKVGFTFGINARITLEWDNDLVESDPWEFLDMIRYYYDKSIEDYEDHIFKMIEEEKNNYEPYVGLESQLFSRFYQENEHMLTFKFFVKSGETVLDHQDLEFFKSMEPHLDKGYIMYQLVMLTQFLRDIYPIEFLEKYNESAMRIEGFDETE
Ga0181607_100193053F027780N/AMLSLWAVPIGARTFQRKYNAKQIPHVTLLENLKPEKRAHEFFPTTMNLKAQSTEMVVRKMKDKYQYGWVFAYEGGDLFMTCHEVNKDEISAMDIRKLDEKELNTVVTYSIDGVLVDPSDLDTAWAYESDENWL
Ga0181607_100193055F027498AGGMPSKGDIKPVEGSTDYLEFNGKRWHRFNESGKDAGVGVWGVTDEVGSPAIRWFLRPRARRFN
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