Scaffold Ga0181607

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10018704 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5284
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5284

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100187041	F010211	GGAG	VAKPKQNKWSDLLVNVVGHEPPPDSLDLRNSFIENCLADQDGFKVTQADIHLTMQKGIFDWQEQANTINARLNGLIRAPYNTGKSQQVPIGLSAYLTTRKHELETLIVSADGGISTKRILSLRALFTSDMYRYWCKEHNFNPVEFDRTDTGSTQRIIVSSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVCNDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNFGK
Ga0181607_100187044	F060872	AGCAG	MREPDKVWDIPLWETNHSKQRLLQEEAMDFLSYKLGYEMSEETDDPTRKAYKHFDGYNHYPDGNLTALDYDSGHPVWLCADFNRSPHCWALLQVKKARNGLKQYVIFDEIFSKEALTTEQALKAVELLNKWGISKVLLAGDNTSNQKSGNYGRVGKNDWDYVREVFDENDISYKNELDIQNPKRKVRVDKVNNVIYAGTNGERRLLVNTRCEHVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGNASPMYVLR
Ga0181607_100187047	F088821	N/A	MIDTSKLYSVSKDAVEDIVMKETRHPYYSVVLDRAKMMNSWFQAEYDEYTAISSTVFSDKSYIIDQSSIESDEEYRERLSRMKLFPLEQKFFSAQQRIYDENNVNRMYPENKDFWKWKETNFDDAGCSITEFYRDKVLFVKEVLGFGAVVTDLMMDGSGNPVTDTDGNVVPYNFVVRPHEIWNFQVRQGALTLLVTRQMYYELDNVKKHKWTAYTPEYICVYIEENGKKQKTLEIPNPFGEVPATLLKGQTDANSSFIVGKPRRYCLKGMYLASSELFYDLKTGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDDQQIPSNMLYQADMQGLQHLRDVIFGDLMSLIFSMAQVRDKSIVKSNVSGSAKRFDNVEEQGLLASTAMDMEMIEMQVLRRMAKVRDEDYEGYGVTYSKHYDLSSADEIFQDITEGMQYHAMSLPLIKKLTAEYMRKRSMPQEDIEEVMQHFNEYGMPKTATDLRNLVDILPQEELQRQAQVGIETQSEQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181607_10018704

Overview

Ecosystem & Geography

Associated Families

Sequences