Scaffold Ga0181607_10010206

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10010206
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7616
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F019103	Metagenome	231	Y
F037222	Metagenome	168	Y
F049420	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1001020615	F004450	N/A	MNWLAAGLVALVMSAAYLLDGPSEHEAQVDTVEEKIQRMCGENAGWKMLDDKSIQCFTHRGHKTKKVTL
Ga0181607_1001020616	F019103	N/A	MNKTPVWTTGYKPTKEDLKGLCNHRFETAGGLVLDCYLAFEKKERATFDDPGCAAAVELIWALVEGVDISEVLGDWVETIEEEALSDLEDQIEDAALDRGEA
Ga0181607_1001020620	F049420	AGGA	MALTNFKKEEIPEGKSDLLCSVDGCNSRWSVRIDGQLPKCSHHQWQQPKFGNTKTYQQYLADKDSPGVPPVSTWYNKEPW
Ga0181607_1001020621	F037222	GGA	MDTITPTPTLPKHLNWLETLTQTYAELALAGGNQAQKQGRRDYLVARFVALEQDFPGITAMIHTKIKAMK