Scaffold Ga0181607_10007670

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10007670
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8950
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F015716	Metagenome / Metatranscriptome	252	Y
F062168	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000767014	F015716	GAGG	MNELGQGFFAGVFAMYVLALPLLYHMVEPEDEEMDNSGPIKFAFLWPLIALEVLYRIFVGEKDNDGTGTN
Ga0181607_100076707	F062168	AGGA	MNDLKDFLKEMGLESVHPKPSAEKPDYMQPGYYVDPRNKYGEVPF
Ga0181607_100076709	F000375	GGAGG	MAKLYDLEPMIMDCWHVCDDLQVVFRQIGDGEREPTPDEMMNTLMGMQQLYQWKFEQLFNKYEEVLRDRQ