Scaffold Ga0181607_10006169

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10006169
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10076
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007645	Metagenome / Metatranscriptome	347	Y
F009922	Metagenome	311	Y
F045156	Metagenome / Metatranscriptome	153	Y
F066266	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000616911	F009922	AGGAG	MENTFDINSFDKDRTSAPASFRQCQAIGYKFAKKGTKMNWKLQKQITGCLYSLAKDERLTFKKAHTILQAKSLPKVYLDKIALYLKENS
Ga0181607_1000616917	F007645	AGGAG	MAKYVYGKRDTKTVKSIYDRASIGEKAIWNFANSLGVNIVRVRKNKERNETTVGDTFLGYHSGKVSIYQQRGVPSRPLHFVRPTPLGKDNKGMQILEVANNLDVQEVLEALKDYQILMTGSFFGRMKLRFARLFS
Ga0181607_1000616919	F066266	AGGAG	MSILNEHELEKKIVSTIKYRIQEALAYRTYDSKTNKRCLQDYRKTIRDAKDFDELKRIMSEFVDDLMHI
Ga0181607_100061696	F045156	N/A	MPHAGHFKFKALHKQNSRLSMRRNQGKPGNITRDEFSKNWDKIFGKSKGLDKKKGDDNAKKNND