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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017950 Open in IMG/M |
| Scaffold ID | Ga0181607_10004382 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12087 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (86.36%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011403 | Metagenome / Metatranscriptome | 291 | Y |
| F011589 | Metagenome / Metatranscriptome | 289 | Y |
| F067803 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181607_1000438210 | F067803 | AGGA | MAFRDTLKANLDVALASTNVSVSAELPFNSAGEPLYTKNMKHVYLDEDNISKTQLISTLDKSDVMQTDTTVTAYLAVDAKNDLSDIDTIVASILNSRDAVTGQTVNECEMETDIQEDIITYTFNYNFITV |
| Ga0181607_1000438211 | F011589 | AGGA | MAFVISGGAVVTYAEALDVKDKDQRVFEANEIDFTNVPDAPGSLDNYIEDLCIKATNRVNEKIRMSARWREYLGYAGAGYDSIDNIPAFEGIKIKAKQSTFTDMTAYYVLKEYLLPKIADFGNPESSEVQKIQYYENKFNDLFTELTNVFDYYDSDGDGTVEDGEKMVRFSKTRRTRGRKAITRIR |
| Ga0181607_100043829 | F011403 | AGGAG | MAIINVSAGSEAVLFLGDSAANANIAGSDGLQLPKMQDITLNNSTGVFRFKTLDNTAESAVTTPATNQITLNVVVDDAAFFGTGASVDTVVSTGLFGCSKNKTRVYFNAGFQGTDSGSKYLSGSGFISGLAPTVNMDSPVWVTPVTIEVDGDFANASIA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |