Scaffold Ga0181607_10004289

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10004289
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12218
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002190	Metagenome / Metatranscriptome	585	Y
F007668	Metagenome / Metatranscriptome	347	Y
F075971	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000428918	F007668	GGAG	MRLFRVITVLISLLLTTSALAGNSTPGDAKGHIGEMPPPVWLGDDLKYSMPAFLFRRTQFLRFSLKREEKKMHESAVFFALTSTQNGKIVSW
Ga0181607_100042892	F002190	N/A	MSSKLSYYICLVTKNGKTEEYGYGLPYKEIIEAVEQHHRDGADAVELKMITEDEFNARLPKPY
Ga0181607_100042898	F075971	N/A	MKKTILMCLIFLMSFSMVQAKTIDYLVTGTPGGSAYDNAELFVPILEKETGYTINKVIVDSCVGATIYLKTSKNPSIFRNNTLQHEGEVGCDLAPSEESFIGTAWGRAMAFCSMDSLNDAVNKLKGGNRLTFAVSNSYGQHMIDPLVEVTGTPMKFIPYGSSGKSLKGFVAGDTDMLYTNMPKAVSGVVNNGISCWANTGPTKIMDMEPMRDLFPEYKYNDIQTFTYLNSANMKSSDVKKFRKAWAKLLQADTITTHIENKKLFHPSTYGKNPDWVSILDKAGKDWVGR