Scaffold Ga0181607_10003924

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10003924
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12793
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F021099	Metagenome	220	N
F027355	Metagenome / Metatranscriptome	195	Y
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000392412	F088821	N/A	MIDTSRLYSVSKEVVEDIITKETRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIDQSSIESDDEYRERLGRMKLFPLEQKFLSAQQRIYDENNVNRLYPEGKSFWKWKESNFDDAGCSITEFYRDKVLFVKEVLGFGAIVTDLMMDVDGNPITDKDGKVVPYNYVVRPHEIWNFQMQQGMLTLLVTRQMYYDINNIKKYKWMAYTPEYICVYEETNGKKEKVLDIPNPFGEVPATLLKGQTDANSSFVVGKPRRYSLKGMYLAVSELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDKYDSKTIKEGVGMAIIIPDDQQIPSNMLYQADMQGLQHLRDVIFSDLMSMIFLLAQVRDKSVVKSNVSGSAKRFDNVEEQGLLAATAMDMESIETQVIRRMAKVRDEAYEDYMITYSKHYDLSSADEIFSDITEGMQYHALSLPLLKKLTTEYMRKRSMPQEDIEEVMEYFDEYGMPKTTSDLRNLVDILPPEELQRQAQVGIESNSEQ
Ga0181607_1000392416	F021099	N/A	MAFSDLTLTRDNIDALEELTFSGVNVTTGTTTLNLSQKDNLILAKAIKLLKTDILEELREYINDDTYSTEVALLDAIHVIDTEDLLVDLLSYKFLELWFSQDATHKDSFSYTKAIKYYGMYNQYISANLRRLSGLLAKPKTKPRVRFSSIY
Ga0181607_1000392421	F027355	GAG	MGRLTKVVGEFMGVKFEVKATPIRFDKVIEDRKNMLFDWYKENHPKVHKKLTSDKYTIDDFTFEELNHVNSWMMDEDFRAKYCKFTAEKCMKLAKELPDTVWKSDDLEIGTIEEAWDFFTKRRQVPINGVGVL
Ga0181607_100039246	F010211	AGGAG	MAPNKPKEISWSEALFSVIGHEPPPDSLELRNSFIENCLADQDGNKVKQAEIHMTMQKAIFDWQKQADAKKARLNGLIRAPYNTGKSQQVPIGLSAYLTTRKHELETLIVSADGGISTKRILSLRSLFDSEVYKYWCREHNFNPIELDRTDTGSTQRIIAKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVANDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNLK
Ga0181607_100039248	F060872	GAGG	MDFLSYKLGYEMSEETDDPERKAYKHFDGYNHYPDGNLTTDDYDSNLPVWLCADFNRSPHCWALLQVKKARNGLKQYIIFDEIFSKEALTTEQAQKAVALLQKWGIWKVLLSGDNTSNQKSGNYGRVGKNDWDYVREVFDENGITYKNELDVQNPKRKIRVDKVNNVIYAGTNGERRLLVNTRCENVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGNASPMYVLR