Scaffold Ga0181607_10003774

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10003774
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13087
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.11%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048410	Metagenome / Metatranscriptome	148	Y
F059352	Metagenome / Metatranscriptome	134	Y
F075871	Metagenome / Metatranscriptome	118	Y
F078590	Metagenome / Metatranscriptome	116	N
F086365	Metagenome / Metatranscriptome	111	Y
F097153	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000377414	F078590	N/A	MGLSKLFVTYKDRTDHYVLNNKLEDSVQLNIIENILKHYPKDATIDIADKISITELTRPTLDNIIKQSKK
Ga0181607_1000377417	F075871	N/A	MNTIIQQIADQCIEEIDEHIDNTIHWQLTFDDDEGDELTGELELKIKQQILFSLIKRVTK
Ga0181607_1000377420	F059352	N/A	MKRNIQDWQIKGGFSMDMWRLEVKEKNAWKVEAESKSTTELLKIARGLTK
Ga0181607_1000377424	F048410	AGG	MMVTIKSKDGYNVDITSLYLKAMQKQITPEEYKNELDFITSNPKFQHD
Ga0181607_1000377428	F086365	N/A	MKFTKNELHLMRYAVEDLLNGDDVPNAEPSELKKFETHVNEIIEKIDRMLGLAYNIVD
Ga0181607_1000377432	F097153	N/A	MKKNEVLVKSNGLRNELKEIRKSIDALTNAMIEIHIAQTNKHESINSKLCTCGVDDELRDNKKSANK