Scaffold Ga0181607_10000715

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10000715
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28836
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (24.39%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F005132	Metagenome / Metatranscriptome	411	Y
F006322	Metagenome / Metatranscriptome	376	Y
F008384	Metagenome	334	Y
F010877	Metagenome / Metatranscriptome	298	Y
F013231	Metagenome / Metatranscriptome	273	Y
F016593	Metagenome / Metatranscriptome	246	Y
F024348	Metagenome / Metatranscriptome	206	Y
F032817	Metagenome / Metatranscriptome	179	Y
F056899	Metagenome / Metatranscriptome	137	N
F063074	Metagenome / Metatranscriptome	130	Y
F092935	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100007151	F092935	N/A	MKKEIKDSPTNSLILERKLAFANLVRAYLKFNVSDALNIVVEEDGNISINGNYYKFDVSDYTGCTENYIFLNPSSGRMLIQKDNVKKIYKLDVHLYDE
Ga0181607_1000071514	F005132	N/A	MDRSALLSIIQLEQFTSIQDLLGTCLYERIEEHVKDQKLSTSEEGLFKLVKYTLAMYSAKAAISILRTEAARTKNEEAKQDQYILDTLSSTIDSKLSYINKRITNYILDNPILKAVATADGCDNDLFNEEDTYQGSVFYPKDGITDTTCEDGGVTYDL
Ga0181607_1000071516	F016593	GGA	MKRLKVGVVNTLSFVKLGDFTTNSFDVTLEKVVGSDSLTITNLTDLNNLDSCKDFIRINIDLVSNDLNGGEYLLTLTNNGKSYTFVTEVEDYTITQSGSGIYADTVRFTDL
Ga0181607_1000071525	F032817	N/A	MAFNCSILLSDIDINCNKRVSGGIEKVILLLQDDLTVTFDPNDETVVTQVGTNNTVVFSHNIKDGVTSFDENKSISNALGVVTTNITVQLPSVDNKINKLDYMSRREDIVAILVHNNDSVTISGWKDGLTMNYEANSSTGPSDKSYVNVTLTTESSKASLALDDKTVFTDQTIFD
Ga0181607_1000071528	F063074	N/A	MACTVTLADINYTCDDLGVGGIVELHIANRLSAEAALQYDTDTRVVSAASAAISDVVNIGFNLKDGFSVFSEVKTVNADGTTTTVPTISVELPKMDADKITALNQIAKGGAELVALVKTAAGTYHVSGLDYGLYASTVDGNSGTGRGEKNRFQLTLTGEENGLSYSITETLFATATA
Ga0181607_1000071529	F004461	N/A	MSISISSLPYGDRRPDLFIDAMVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDSQSTASVGEKEMTVETYKWAFLNCKDALESSYRGLLLKQGQHNPETMDAEFKDWVFDYFAKLSAQKALELAGTEITTELAADADVLDYDTNATISSSNILSLMEGAYGTMSDVMLAAVYGDADRDFKPAYFLGTAAMQAYQIAIAGLYTTTPQGVVEGGIPNYYGMEVIHMASLPADEFVISAPQNIVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0181607_100007153	F056899	N/A	MKRNTFVKASINGDYGESLVARYLKDYGYEVEQAPKELFYDWDIKGTKDNREVTIEVKYDSKAYMWAARRGTPEQPNLYIEFKSTTRDADSGILKSKADFYFYILKTGDKDIAFVFNRKELLSHLQMANYKVVGNGATGDDNAVGWIPPLHEILVARYGYKATIDLTSYA
Ga0181607_1000071540	F006322	N/A	MPAKRNRKGDIVKGRGSELTTLQSEFLDRVRGEGMDASSKIAKDIGYTNYYRDRRTAGTAFHKELMAIANAEMKSIEAAKGTNLTALIRIRDIALANNDMKTAMESIKIINDMQGYKAPTKVEQTKLDITATIDLTKQPDEEQDYLDTDAELLDW
Ga0181607_1000071541	F010877	N/A	MTTKQLLIALAGGSLPKGELKAEMFAFYNSMVGKSKYFPKEENPKTACGSCIQRVKTNIWKWYHYDEKAPTYKGLIFTGRLGVRNIPLYTFEDASKKKS
Ga0181607_100007155	F013231	N/A	MTEKNYQTCKLTRNRIDLYLYEMARLFTNIGTDSTAGEIQEAYRKEKEYIELIAELDPEKADRLRSSY
Ga0181607_100007156	F024348	N/A	MINQYYEDLTEDEADFILDLYEVINRLVYNGYPVTLIRLEFELGISTDELSDHLPLILTILNKVEKEYAEIRQDFD
Ga0181607_100007157	F008384	AGTAG	MPRYDKTLIEREAILSAQQGKITNELGKFILQRSIEIASSAFVTDGNKELQQALIDAAVMRTCEKFLYYYLQGKSAANLIISIIYSTMTNKIVSLNHSDVYGQKIKGYLTFIEDGETVTKLKRYIKDDYLSEKL