Scaffold Ga0181607_10000317

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10000317
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40674
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004370	Metagenome / Metatranscriptome	441	Y
F034539	Metagenome / Metatranscriptome	174	Y
F051536	Metagenome / Metatranscriptome	144	Y
F057746	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000031716	F057746	N/A	MAIIGSFTEDLDIYLTENRGRTGASKASANDLYKVGVKDTGVLENGKMYCFEYFTPDETFYDTNPIVLGLGKSIDNHQLGINLHYIPYEARIPFLTDVVRSFQSVIAQQLKGATGNPKSQGSLKEFTYDNLKSSLARKYNLKYAIRQYRLDRIRKPKVLGYEDWYIGAVNNQNKFFGGNINEAQALYYKNI
Ga0181607_100003172	F002407	N/A	METTINKIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVSTPTKDIFEADIDNPVKVSFYNGTKVIDALSHFNGDVKGRIKYTEYDGEYMASDFILENDDLQINLACTDPSLSFMEMSKEETDRAFGTESKMFEFDLLTTHVDKMKSLFNLDKEEDIFTLCIGEKGINIKGTSYDATLCHSYDSSVEKGAKVVIYKKYINLLDKENYKVSVCENKVVFKSLDTNTHLTVAVAITDED
Ga0181607_1000031721	F004370	GGA	MYKVRKINFGWYRRRHGILLENLPPSKQRFMVENDYLKWLEPDPQVYEIIFKVEDMNDHEKNPNRILWNPFRETFTSIKELEKDSDLVDWNCGICKADIKSRMDSKKVENFVCKKCSEAHNSRNKRVDQRIIDSSIKFTKHCKSLLKGEQREFLTYVRRSSKG
Ga0181607_1000031727	F051536	N/A	MMLIDNTFELGIPTHIKFTLFKYDYFDSIIISRVKKECKNLNLSKDGNEYTVKVSSFLNAIKTSKRLRTEIEKAENSGFLPNPALKPNSVYFIVSILSRLENLEFLTFSVNDDKKYTRLVKGESGHVLSFYFSILEGIFDLTQLLDRKELDIFNKTLIEYRIMDNKYLDRKPYFYMKASALLDILTSMEIDGKLDAYGIIDQIDPKLEEDDPILVVKTDYTPY
Ga0181607_100003177	F034539	N/A	MLKKTIDTAKLKVKHVLGNHTALPTYPDSEDVIFELIRDYCGKVAKEIKFTNVSLQKKYDLTDERTNEIIMSLRRDKIIDVSLSNSAYTTYEVIKNPYE