NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10061674

Scaffold Ga0181584_10061674


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10061674 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2626
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022417Metagenome / Metatranscriptome214N
F028777Metagenome / Metatranscriptome190Y
F050395Metagenome / Metatranscriptome145Y
F057387Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0181584_100616742F050395AGGAGMANVYPEVRKNKFTWTYRFLYWNSDKPEVNLYTIDTDKGFQVAESAAWAKATFDGCKNMKYIGKNKMEVENGTDA
Ga0181584_100616743F022417N/AMAQMPKFLEDYTTVDELISKMNKEYPECRLVSELIGYGDDWAIFKSSFFENKDDVEPKATAYAKQTSKDHNSWFEMCNTKANGRCLRIVFSESTLAEEMIGIAPSKTEVKQAPQKTSLEKKVEHLEAEGLVEDISNKKNALMLNLKDYSLGVTGNDLDKARAITAEALSTMGISKTEVSINNLQSIKNKISDLATQEKVYADKGE
Ga0181584_100616744F028777AGGGGGMLGLFGRNKPLTTMETLQLEKEISLAKKIHYILELEGKICSLDPEFNKNGNLRKVVHRLKTEHNAVIYKEECNCELKQKAKLNQNGTPRKHLAYMKDWAS
Ga0181584_100616746F057387GAGMPELSKELQAFWNNQIGNDNNVKAAPFSGNCMFCTKAITEKDEDHSVCNNCWANLGEEE
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Institute for Fundamental Biomedical Research
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