NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10045960

Scaffold Ga0181584_10045960


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10045960 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3104
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007062Metagenome / Metatranscriptome359Y
F009502Metagenome317Y
F049008Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0181584_100459601F049008AGGMNRNSQITQLTRECDDLAARFWRLEASGRGQGYLEWLQKVKQTADIIKKNRPKTFYFFGNELESANSNASRRSARKKVEKSREK
Ga0181584_100459605F009502AGGAMETKQEIKKEQYEDIYDCIVSDQVPPDQTAEYLEDMGFYKYYIKRRALGGLWKKKNAL
Ga0181584_100459607F007062AGGMIDEPRFKNIQKERDLLSVEHIKKLEEEIDMLRKQKIYLQSQLRKKHDKENQESK

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