Scaffold Ga0181584

Basic Information
Taxon OID	3300017949 Open in IMG/M
Scaffold ID	Ga0181584_10035943 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3558
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3558

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F018534	Metagenome / Metatranscriptome	234	Y
F019909	Metagenome / Metatranscriptome	227	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025729	Metagenome / Metatranscriptome	200	Y
F027834	Metagenome / Metatranscriptome	193	Y
F027835	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_1003594310	F019909	N/A	MTKFEQHIGKQIPQEVLDYMASRTIEQIERQAQKLKFDSWCPLVMENDSPELRKELKQASDLLFQWIDFQSVAK
Ga0181584_100359432	F027834	N/A	MKNFSFDEAMCFAYGSTMLTGGSSIGIMDNGEFYVPKCGYVVGGIVPEESCKMDNESAFKHTYNRLFHQAELALERDSAVVIGTWVEDSKIVFDLCNVLDDEQEALALAKKRGERAIYDLENQKEIFVK
Ga0181584_100359433	F027835	N/A	MKTQQHIDALYERRKIAGGFEQALIDAYLKADNGNTRILEDAFKGTRFDLTPKPKFNSGVETLRNAAYWSGHRDEYLNDNKTAYQIIDEYLKEND
Ga0181584_100359436	F018534	N/A	MALPTLTDFLNSWDKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQINSSTGECSTVAFLVAYDENGNRVTLRNQTYGCFGDEEKQFHQWFAKKMGKACGLDVSRRLDVSRAVDDFLE
Ga0181584_100359437	F025729	N/A	MDKSIIDRLEYCEETYAGETETWRDPVTGDYYHVPIEIVRDFDNAMNLNDPN
Ga0181584_100359438	F020115	N/A	MTPEQFEIFHQWAERVANTANDTDTHIRAIDLLHDIAGILANDEHFLPRL
Ga0181584_100359439	F009699	N/A	MMTDKEAQAFMQDVDASAPFWVELHDEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHSEFMGRFKEQNNDEI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181584_10035943

Overview

Ecosystem & Geography

Associated Families

Sequences