Scaffold Ga0181584_10023766

Overview

Basic Information

• Taxon OID: 3300017949
• Scaffold ID: Ga0181584_10023766
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4460
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048362	Metagenome / Metatranscriptome	148	N
F073589	Metagenome / Metatranscriptome	120	N
F076607	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_1002376610	F048362	AGGAG	MLNKIQNWLMNVAARWLWVAIMLPFRIILGLCYAVSKHMPDKVELPYKIVKKDSKQGWL
Ga0181584_1002376612	F076607	AGGA	MSSFKQQILEDIEKLHFDYAECKIEMEEFIAGITRLGVDSPADIEEHRLNAEEARYEYKVSQHQSKF
Ga0181584_100237665	F073589	GAGG	MNYKVNIWKDETLKREIVYSADNDIQAIQMASAATPDGCRSTYEEITMEEAKCLTEKEPTDQSEEDLAKAS