Scaffold Ga0181584_10010748

Overview

Basic Information

• Taxon OID: 3300017949
• Scaffold ID: Ga0181584_10010748
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6790
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (48.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002197	Metagenome / Metatranscriptome	584	Y
F044463	Metagenome / Metatranscriptome	154	Y
F046343	Metagenome / Metatranscriptome	151	Y
F081087	Metagenome / Metatranscriptome	114	N
F082390	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_100107482	F002197	N/A	MYTLKLLAPFLAAMCLEGVATGQGDHCVIDNRPPTVVKYYEPGKSCYINGTFYSKCEEANGSI
Ga0181584_1001074822	F044463	AGGAG	MNPKEKIILAQMQIDNLIALTKDLQYAGFITSHLLPVRYELQRQSHLLTGTNYYNRIDE
Ga0181584_1001074824	F081087	N/A	MAKGFSPKIEERYTLEEEQTSGWYAIEENISKQRCKELYDERLNEGVNPRRLRITRIA
Ga0181584_100107484	F046343	N/A	MTLAKTGPGILTDEEMKELIALKEAITYAPHTVSAHKMEKFAELMVRSLEGKESNTP
Ga0181584_100107486	F082390	GGA	MVTVNLTEQQLALMEELVGEKFNQVAQAWLPAEETKEMNNLCYNTMLNLRCVRMAKEFDETYANWDKSFYSFDKKEYLKDVGFVTDEELAQQGIC