Scaffold Ga0187847_10000574

Overview

Basic Information

• Taxon OID: 3300017948
• Scaffold ID: Ga0187847_10000574
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39527
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017679	Metagenome	239	Y
F027573	Metagenome / Metatranscriptome	194	Y
F046778	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187847_1000057417	F046778	N/A	MHRVLDTAFSIILFAILVFPAIGQSQQDPLIGRWRSTEVSPTGVSAVFEFHGDSQLDSYSAAISEEKYQLIGTDTILLFSRNGREKQEVEWDSQDRARIEDEAAGKSIELTRLGKIPDTKNPLTGEWSTTREWNGAKYPARVRFFPDGKAVWITTLRTEHGRYSIHSNGIRLEVAGRPVLEGSFTVSESRLTLPNPKGNGSYSFDRF
Ga0187847_1000057426	F027573	GGAG	MIGAEARLAASMERMSREIFRLGRAQQALFAFVDSLAKVLLTCVPEPGGEALEVAVARARRRHVQLLQSAGQAMVGDSQLAMQDLVNHAEG
Ga0187847_1000057427	F017679	GGA	LRSLPSIQPATKIGQVMWAWAEIEAALAAGMKLKEVWAAAGRDGLEMSYAQFRVYVSRLRRRQQRSCISASQPPLAATDGSPTLAAPPPDDPFRNLREQREKKKQTTFEYDPFSIHKNLI