Scaffold Ga0187847

Basic Information
Taxon OID	3300017948 Open in IMG/M
Scaffold ID	Ga0187847_10000049 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	128425
Total Scaffold Genes	95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	78 (82.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

128425

Total Scaffold Genes

95 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

78 (82.11%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000525	Metagenome / Metatranscriptome	1049	Y
F000677	Metagenome / Metatranscriptome	940	Y
F001303	Metagenome / Metatranscriptome	727	Y
F003874	Metagenome / Metatranscriptome	464	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187847_1000004910	F000677	GGAG	MKYLLLILLLTGAMQAQSFTASTSSGFPDTPGQRAFWTFENKANVSLLAGLIAADAITTQRGLNEGLTEVNPVMRPFVTRGAAGEAAGSALGLGAGVGVVYLLHRSHHYKAERITLRMMIAGESGFVANNIIAIR
Ga0187847_1000004915	F001303	GGA	MLQGAIVFKTQVSATPGQNGKDLMDRENRESMDDIHLRILRITDDLRVIQRELNCAAMQAPTDPELMEALADPPEIESIQVLKSALDQMRHFLWFYMQVVASDSEMGEKFRQTLRQEAPVRPELEQQFQSATDAIMLRYLADSKFRKPN
Ga0187847_1000004944	F003874	AGGAGG	MSVKQLTIGVLVAVCTLVAQAAAQKNELSGLIGRTFNPDQSIAGAPALDPDLRFSNGLSFEIDYARQVVAMGRGFLALSLDVPFVVNPDQDLHAALPNRIPNKYASYFVTPSARLSAFPDQAVVPWVSFGGGFGHFAPSSDLLFGGTNPSQGGTTTGVVQGGVGLDVKIFHGFSLRGEGRDFWSGVPQLGVNTGRSRQHNIFAGGGVVWHF
Ga0187847_1000004986	F000525	N/A	MLVSVAPGCSPRDFLTRRLAADLISASEVFKAPQLFWLKTGVVSNKDFSSPDSMVLQRRGWILGTEEKKCPPGLDPPPCWDVVLTPLGVDAIRPLITGAHPENGPMAIQVARRELVSVSGISKAGNFANVEFTWRWVSINTVGAALYDSGVYYRSTVGFRDYDDGWRVFEQAVPSNQPLDEALRNAQPMSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187847_10000049

Overview

Ecosystem & Geography

Associated Families

Sequences