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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017948 Open in IMG/M |
| Scaffold ID | Ga0187847_10000019 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 180933 |
| Total Scaffold Genes | 157 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 111 (70.70%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000439 | Metagenome / Metatranscriptome | 1137 | Y |
| F000985 | Metagenome / Metatranscriptome | 813 | Y |
| F001371 | Metagenome / Metatranscriptome | 712 | Y |
| F063426 | Metagenome / Metatranscriptome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187847_10000019114 | F000439 | GGAGG | MEAGKNNGDGLYAIAAQGNGAPAQQVVKAAHEELLQLMRQRAEIMKRIGTVKQTIAGLADLFGEKLLGDDLLELIDRKPNGRQPGFTKACRRVLMEVRRPLGAREVCAELARYAPAILARHKDPLASVTTVLNRLVDYGEARSLSNDHGRRVWEWISDSEGVSDGMVEQKTA |
| Ga0187847_10000019119 | F063426 | N/A | MPQEISVSYLAIKSKVYRLIDALVDGEKTEAEVRESVRRWWDLIPPADRPIAQKYLLTVLGRSESALDAIGGGLNSSRGCKPTYASLPSGQIKMKVIEQVVKQSGVRATVVAERG |
| Ga0187847_1000001941 | F001371 | AGGCGG | MPPKSATVRKATESDLEVGLICADRDGNRIRIDRLDSGAGTLSYHFLNDELRVQEGVKEHSIERFVGEGWYVAAAGRSL |
| Ga0187847_1000001971 | F000985 | AGG | MKNVYEVLRQKELELSRLEKEVEALRVAAPLLSDEKEPLPEASKVTLTPTTAPQPVRIPPAVAATAPARVAGWEDAAKRWP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |