NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187785_10075474

Scaffold Ga0187785_10075474


Overview

Basic Information
Taxon OID3300017947 Open in IMG/M
Scaffold IDGa0187785_10075474 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1308
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F018046Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0187785_100754741F018046AGGAMPVVGSSGYNTAGQITSLVRSLLNDAQGNLFTDAVLLPYVNSAYRKVQRALGNT
Ga0187785_100754742F000739AGGAVNEKLQRWEIWMRGMLAAGISGASGGVMTGLAAVGIDPGHFNLQAGIGATVRIAIAAALINAVIGVAAYLQKSPLPA
Ga0187785_100754743F000512N/AMIRVTREKHETLESVAQRLAAAGGLNRYGEANYRVVWGWNRLAWIGGKFEDRDESGQLIREVVELRQEPKYAAVNRWHVERWMAPEEYGSPRAWYSQTVEMAGGRSVPALGPFPERGEYEHCFTIEGAGGEFVQLTATIVERVAEAIEWSRRGSRKEQREKLYEREARGDREYEQWALDLLSDAMPALHGQAFVTVI
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