NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187785_10052753

Scaffold Ga0187785_10052753


Overview

Basic Information
Taxon OID3300017947 Open in IMG/M
Scaffold IDGa0187785_10052753 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1529
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F002850Metagenome / Metatranscriptome526Y
F008441Metagenome / Metatranscriptome333Y

Sequences

Protein IDFamilyRBSSequence
Ga0187785_100527531F008441N/ARELLKAAGRARILAAAPAPRMPDVSGGDRQAQLIEAYADAGLLWAKVVGSSLALAGALIERGEWEDVRALASFLFSAGEQSAAAELRIQLGREVWETHREQLHAVSNDMPPAAIEQAINALRAVLREVPEEYPDRNREVNRFLPPLASAVHAIMKEQEADIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICRPPGGT
Ga0187785_100527532F001698AGGAGMAGVINDIEALAEFRAHLMRFNHDLAENFTAMQAHWRELGEVWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGVGRPPEAGRGQGNGTGRR
Ga0187785_100527533F002850GGALTGIHADIDALKGLHGALVKYRHAQRDVTARGEDQLRVTRASLEAKASRGQTQLELSQAELGACRDRAARAAADDTADGTVDCSGYARAVEQCGERLEAIRRWQQRIDAEAVEFQGIAGRFADLLLNELPRMEEHLVAIIASLEAARRVQAPAS
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Biomedical Sciences Research Center "Alexander Fleming"
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