NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187785_10012292

Scaffold Ga0187785_10012292


Overview

Basic Information
Taxon OID3300017947 Open in IMG/M
Scaffold IDGa0187785_10012292 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2933
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002538Metagenome / Metatranscriptome551Y
F012369Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0187785_100122921F012369N/ADTIRVHFFVGSKSQGWFIRVTDLNTHRSGTIVLNSQYGPLLPAFGTQEIGNALGWGAVFDTPNSFVWEIGHTSNFASPPGDFCVPGQTQCDSYDQAHWLGFTPLRIKSVSFANGSHARKWAVVSDYGGTAEVNDPSISPQCTSYGGPFCIYPWYAFNGKAGALTYGANYPGTRFDYGKADQFATTPQCGGPFGPDSTYCVTIIKPVPLGGSQ
Ga0187785_100122923F002538AGGAGGMRYLLVLDMDLLALDEELDLQPINHLVARQEREGERAEVVVLSLAATHLAKLSRLELALGAAISLNMPAPVKYPVAPRPGHDINAAAEHRMNRAVRHLRTIGYQASGIISDLELVKAVRAETRAHEYDEVILATGRPGGSWLARSLHFDPIHQLRRRWGPRLVVFAPR
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