Scaffold Ga0187879_10026392

Overview

Basic Information

• Taxon OID: 3300017946
• Scaffold ID: Ga0187879_10026392
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3542
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F102015	Metagenome / Metatranscriptome	102	Y
F106053	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187879_100263921	F106053	N/A	MPSASGLSRDQRIRCRDRVVQAARLTLANKDRTHYTEGPQRWDGIKNRRNAEIGQFPEYSDCSSFATWCLWNGLVLRFGLGDIVNGAGWTAGYTGTMLDHGLPVRYPSNVLPGDCVIYGSGPPGVHCAVVVDMVNGTPMVISHGSEPGPFYLACSYRPDVLSI
Ga0187879_100263922	F102015	N/A	MTGNEDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDS