Scaffold Ga0187879_10000051

Overview

Basic Information

• Taxon OID: 3300017946
• Scaffold ID: Ga0187879_10000051
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102662
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003084	Metagenome / Metatranscriptome	508	Y
F009411	Metagenome / Metatranscriptome	318	Y
F009619	Metagenome / Metatranscriptome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187879_1000005163	F009411	AGG	MLNDELRKQAGIARLASDLRSAKIELLSAQCATDRLRLQYSVADIVSFGERQALRGAIASAGALCRFFSSIEDQLKQTEQE
Ga0187879_1000005183	F009619	GGA	MAQECQKGPPRALLLRDLDHSPLSSPFGKVWSRMGGFSILTNRKRAVVALVHSVVFLLIAVRQMVAANPASGIWVPSTVPTGTWILCGVFAVVSSILLWLFVISRGWMEKFYFGFCTVSASSGLLRTAAGDQAFHAGIYIRVIMLVSAVLVGMLIVREHSREAPECAETSS
Ga0187879_1000005199	F003084	GGAGG	MSGKQAVIAVLLMAMCILRGSAAAQDEKNELTGMVGRMVISDQGIVGATYPNPFVRSGKGLSFEIEYARRLLGKEVYAISGEVPVVFNLDEDLGSGSDVVPKDYKQIFVTPALRFNLFPATAVSPWVSLGGGFAYFNENKNLNYYGTNPGGSSTSGVLQGGLGVDVRPFRARFSHFGFRAEVRDFWSGTPKLPLADTGKTRQHNYLIGAGVTWHF