Scaffold Ga0187879

Basic Information
Taxon OID	3300017946 Open in IMG/M
Scaffold ID	Ga0187879_10000008 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	264987
Total Scaffold Genes	212 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	186 (87.74%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

264987

Total Scaffold Genes

212 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

186 (87.74%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F003988	Metagenome / Metatranscriptome	458	Y
F007543	Metagenome / Metatranscriptome	349	Y
F031942	Metagenome / Metatranscriptome	181	Y
F033872	Metagenome / Metatranscriptome	176	Y
F065417	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187879_10000008149	F031942	GGGGG	MNSRTYKKLSTQPLLKSKAARGGTPSKFAMFIAFTAIAVIALATVSRAGELPEAPSSSVMRMSPAMIEVAAPVSTPRIAENNPVVDKKFISLAFISTSSTFADSYTTLFARQNWLAGKKGVCNEEVESAYLYGTHPTVARTYSVAAAKSVGSAFAAYYLRKHHSKFWSAPLIVNSVTSLQGVTQNMIMCN
Ga0187879_10000008168	F007543	AGGA	MESNYVFLCGVMWCKFGQRDAGNELLRAADSGDPDIKALARAMFAKGLPRSRDWGKQAQPSGGTMVAGELWG
Ga0187879_1000000820	F003988	AGGA	VKRLYTIGRVKGGMKFTCTHCAHNVSTLDFDPRDGNLRTQAATAINQHATSVHHEPVMFSSLDAQQHVWRS
Ga0187879_100000083	F065417	GGAGG	LRKLALLAPIFALLFSCHFAAAQQGDIMFFGGTLLSSSPSGSNLLSGNIAEKGGTYLGVSGDVVGFKHRLGFNIETSWRASQANYLDQEVNYRPILTDFNALFQPKLGKKIGADIFGGIGIASTRFYFPFITGGNSFTGYSNYTSSDHFMEDLGGGIRYYVWHHFFVRPEIHYYHIQNNTSNSSTGAGFSSDNVFRVGASIGYTIGND
Ga0187879_1000000870	F000036	GGCGG	MAYKETFWMACDSTEQLRAEFGPFHTRAEAETEARKLGFGYVLRYEHLLDENEEIQEVRCVFLELAGAPAMESSTVSLHTRCATCGASATHEKAWQAEVWADIHEFEHARHRVRLFEHARGKGLKEIAGWRG
Ga0187879_1000000896	F033872	AGGAG	MQSCVIQDSNFRGNIELSSHSRYSFYRYSLWRANSGEHLFDGAAGDRTEALDTMRAHIRYLSAGEGLAARE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187879_10000008

Overview

Ecosystem & Geography

Associated Families

Sequences