Basic Information | |
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Taxon OID | 3300017943 Open in IMG/M |
Scaffold ID | Ga0187819_10038908 Open in IMG/M |
Source Dataset Name | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2812 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 35.9061 | Long. (o) | -76.1569 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000995 | Metagenome / Metatranscriptome | 810 | Y |
F018219 | Metagenome / Metatranscriptome | 236 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187819_100389081 | F000995 | GAG | MYETDNGLGPPAGPGYRLPEAGPLPDLPLYERLIDDGIAEADHRGTIVDHVTARRLAIWLAARPQAPDFAHGLVRFIETGAIHPYLKNELRKHTRSGTYSDQPQAARLLKYAINRGTDLGPIGENFAAACDQIDRADVILAQFHDRVRHGRVHPEQAWPDRDGPRIVALARRDPETQTVTFVLDATTANIAMFAIAAHADEREAHVREVERSGRGMPEGSYGRRNRQAIATRETRVAARLRAVEQAYRTAIDRDSAFMPPEPTRTSRSPEFQPGR |
Ga0187819_100389086 | F018219 | N/A | AANRALEADPAADLSSLAAAARQAGLEDKEITRTLDSARKTGHVPADHQAEPGS |
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