NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187819_10038908

Scaffold Ga0187819_10038908


Overview

Basic Information
Taxon OID3300017943 Open in IMG/M
Scaffold IDGa0187819_10038908 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2812
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000995Metagenome / Metatranscriptome810Y
F018219Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0187819_100389081F000995GAGMYETDNGLGPPAGPGYRLPEAGPLPDLPLYERLIDDGIAEADHRGTIVDHVTARRLAIWLAARPQAPDFAHGLVRFIETGAIHPYLKNELRKHTRSGTYSDQPQAARLLKYAINRGTDLGPIGENFAAACDQIDRADVILAQFHDRVRHGRVHPEQAWPDRDGPRIVALARRDPETQTVTFVLDATTANIAMFAIAAHADEREAHVREVERSGRGMPEGSYGRRNRQAIATRETRVAARLRAVEQAYRTAIDRDSAFMPPEPTRTSRSPEFQPGR
Ga0187819_100389086F018219N/AAANRALEADPAADLSSLAAAARQAGLEDKEITRTLDSARKTGHVPADHQAEPGS

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