Scaffold Ga0187808_10072525

Overview

Basic Information

• Taxon OID: 3300017942
• Scaffold ID: Ga0187808_10072525
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1478
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020887	Metagenome	221	Y
F025336	Metagenome	202	Y
F054526	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187808_100725251	F025336	AGGAGG	MALLALIAAAEATLFSASQAKRYHARRQQVLMGNAVDSLRALPLVDGYLKRKNAGASRVQVFVAAKVAEVCRLAVHTRAFESLLLHVIRTAIQKRRRKLSISHLGVTL
Ga0187808_100725253	F054526	AGGA	MLHLQNNPNTPELIEQVIGSGLFAFDDESYFSWQGCEHCADGLGAEVYDLRGYRSLEDRELYEFHVCGDCISNQYYGGN
Ga0187808_100725254	F020887	GGAGG	MRKTIMLYGEVAGIIWMPAIECTKDFHFELTRIPRHSTTRTYPGIAPRSMEITCSRDALLHVTNDGDFQSCAITWAVLEVSHYSGDETRRTRTVKIRTRVWELRGKGQNSDCFGNGELWREGMR