Scaffold Ga0187850

Basic Information
Taxon OID	3300017941 Open in IMG/M
Scaffold ID	Ga0187850_10029323 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3023
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3023

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F016632	Metagenome / Metatranscriptome	245	Y
F028392	Metagenome	191	Y
F093116	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187850_100293231	F093116	N/A	RIPRNRLAIYNEPIPVTTAMDIAREEWVELFKKARKYADKESWKRCWRVPLEIRTFPTRPEAATAARDFWHLYNRTREAKKAEFLKAGKDHRDKRVTNEQEAGLAAYLFAEEDVHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGITRKYVPITWESDRVRADYGHLNLDVIVEDTLVRMVGSTPNPASWLGIVDVPDGQYRLEHGLVATEDDNDAPSQVPSVALPAVNGFEQRLKDMTLQQQDRQKIEEELKLFRDQVGQRVTIKPVVYHNPKTRQDEPAAQVFLEGKPEPLCWISRDHVSAVTRELTGILVSNGKYSLTAVCTLPQ
Ga0187850_100293233	F028392	AGGAGG	MPNMIAAVHLPDALRSGNSALVKLAGKIDSFSLVLWRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRHFPGEGILDFSTDCASGQLEPGDLGKPPQPKRGRLCQECCFFLGEPEEHISETTISEALEGLVPVA
Ga0187850_100293234	F003859	AGGAG	MDELNAQKGQRSDGVSITDYLLPVANLYKSLKLGWQWRRLKWAVAAASEAAQGHEANGVRPGSQEFKTLYDEVANKVQVYSDESGDPIDTLKAKLPALCAIERLAHPDPTVPRNKAGLTLGIFIAALLGSLGMGALIGLGTGMAHWIAHLFA
Ga0187850_100293235	F016632	AGGAGG	LTGILETFALVEVGSAIGFLANWRNKVLKTKVNFFRQPNNRPSPFDKVLRGKVGRAATRQDRLRLQLADGLVNLIRKLVQYDAFRQVVRGLALAHSPMRKALRKKGERPWRSNHL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187850_10029323

Overview

Ecosystem & Geography

Associated Families

Sequences