Scaffold Ga0187850_10000217

Overview

Basic Information

• Taxon OID: 3300017941
• Scaffold ID: Ga0187850_10000217
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79042
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (91.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003300	Metagenome	495	Y
F021887	Metagenome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187850_100002171	F021887	N/A	MLAEMDEAVETGPVRAFPGRPARVDSLPALPLRPLIAEYTATFGSTWAAVTRRKHRDDFARLVDWLEARGLPVTTASLDFMTLVDYVTDLRSRPKVSGVWRGSADALARSIAAGPMQTLSANSVNAYVRPLRSLAIWLVDEGLLAVNPFRRSRRRAALNPLLPSEETPTKSATLDDLHALERGCAGDSALDLRDRAIV
Ga0187850_100002172	F003300	AGGA	MLPTDDEFRAALRDILERSDLSMRALSAAMGRDTGYVAALLDPSRPSRARPTPADLVQASDATGIAFVELLEALWGIKSSRLAEELGCLGVGGSGQAAFERLGDSERREVRDFTEFLASRGRQRRRPNR
Ga0187850_1000021751	F003300	AGGAGG	MIPDEREFRERLTEIQARSGLSMRALSAAMGRDTGYVAALLDPSRPSRARPTPADLMAASNATGIAFVELLEALWGIDPERLAREIRGFPDIGSADARSRKLTAAERSLVADFAELLVARPSRPRS