NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187853_10042320

Scaffold Ga0187853_10042320


Overview

Basic Information
Taxon OID3300017940 Open in IMG/M
Scaffold IDGa0187853_10042320 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2367
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023510Metagenome209N
F057061Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0187853_100423201F057061AGGAGMSNDKNLLSELIALSHSPIHNHLKEEDVKALRLEDEQTAEEFIYSDGEATEVEVPLWNHDSRMAFHILYDATDVEIITRVRRPYPGKPVLYQKDEHFMQHETRQVLDALMPEGARYGIVTFEASGKDGCKDMAETAKFLCRHGWTEGDERFRVVYADVNGTGTMVLVSASANVKRLKDLGVFISSDPKAPKRMRRTMAAHQSMLEAQIVSSYAVPTGQVTMAKLKSGRVISILNFNMKLLNDQETSFLDGSGVINLPGFDGSAATLVGPFGLGKGIYAANERMADYDIYL
Ga0187853_100423203F023510AGGVGLWYIEDRDHAGNMVKPIDPWPAPGPNSHIFFKVTAVNPNHYGISPTTFIIEALNEETAVECVKRAILAGILLPHSYDGALNPWPAYFQSNALRYLLDGMFVAEELETLPTLRFFPDPCIRDEWLRYQLSWMARLVEDIQKWWSAVKARSFFTSWLGR
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