Scaffold Ga0187853_10034534

Overview

Basic Information

• Taxon OID: 3300017940
• Scaffold ID: Ga0187853_10034534
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2678
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039920	Metagenome	162	N
F044872	Metagenome	153	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187853_100345344	F039920	GGAG	MIDVQALDRTGRRQVLHGFIRRIWQEGNNAVLRDAHQNLPGFTALMERNVRVMRPGVALEKTLQAVLAGPAKPKFRRADPEVNHSSVRFVGLDKLKF
Ga0187853_100345345	F044872	GGAGG	MNTGLLNTFASMVKGNLIVVDAIKAALSKFEGQPPSDDQVLVAISETLFTVALNKDARQTVSCYLIQLYANHLFISDPTSEFGTCMRFARREIDELLSFTVLDRIAKYVWGRRDQFLDLWTRFAEDMEAYPQSTTHILQRVVVDTVQLLEAA
Ga0187853_100345346	F062380	GAGG	MPSDFNDFGDFEELLFADPGSRGACKLIIAYHPAFPLALGRIECASGLPIDVRVNVLESTPVMHTAELVFTGKTTDLCELQMRLTQWAAQFPHLSPMPEEALYARDNPSAPSGPPEGVDQSGV