Scaffold Ga0187854_10419828

Overview

Basic Information

• Taxon OID: 3300017938
• Scaffold ID: Ga0187854_10419828
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 560
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010139	Metagenome / Metatranscriptome	308	Y
F015119	Metagenome / Metatranscriptome	257	N
F070324	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187854_104198281	F070324	AGGAGG	MANISELLNGWGFGKQTAIGTANLVATIWRHTNLNTKPW
Ga0187854_104198282	F010139	GAGG	METIFMRSPDGEVKEVEATTEALTPRMASGWHQVPAPAAAQKPVVVAEEEK
Ga0187854_104198283	F015119	N/A	AHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGAE