Scaffold Ga0187848_10033415

Overview

Basic Information

• Taxon OID: 3300017935
• Scaffold ID: Ga0187848_10033415
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2578
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046150	Metagenome	151	N
F057847	Metagenome	135	N
F059592	Metagenome	133	N
F102366	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187848_100334152	F102366	GAG	MMMVLSHINMPVSDVARFEVSFTGNSDCFVARLDFPAHRGGGYQVFEGILGYKVSPSSPVMGKNRVTPRFPLRPTIPPQTAEDLKEEERQLRLRLDYGETFNNDRVS
Ga0187848_100334153	F059592	AGGGGG	VPKHQLASRSVNVEFLAGLELVSNKVFPLPGGVGRRQNPTAYDPRLTHLSGLTPVGEEVIYYEHIATVRHKATNQFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREIHIYLVTRTPQSVPIMRSHEDWLAHIADIGTFDTLAYFLAKNDVIDEKALATLR
Ga0187848_100334154	F046150	GAGG	MNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQGPQKVYLCPCGEIMIPPNYASGVPAGSERDLFVQSLKLAIARRNSTTLDQVAQGTVSLAEHNKLKAQFEELAGRFNAWAGGGEMPEPVELSTEGDEETHEQEPAPAPLQLTMRELAAKPPIATGTQGRSAASAVQSIGDHKEVTSTPAPIYTGGARERMKRQGGQ
Ga0187848_100334155	F057847	AGGAG	MPETLPIFMKGERKPVNCFRDAEGFLVIDAVLGDDDLTVVNPDSGEVRFRITDGEVTDLRPHEHEWNVDSHCTVCHKSKQQINEEQDEQTHPTAVE