Scaffold Ga0187848_10012336

Overview

Basic Information

• Taxon OID: 3300017935
• Scaffold ID: Ga0187848_10012336
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4837
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F025900	Metagenome	199	N
F050080	Metagenome	145	N
F056263	Metagenome	137	N
F085038	Metagenome	111	N
F100248	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187848_100123361	F050080	AGGAGG	MASSFVSRQRNQQRNTPPVAIKPFVRAAQNFALQTKQNREITDGSGQTMGTEVYTEIRMQGNVLAIRDEGIEDEFGRQYIGVVIQINPDKDRFVQTADPELHAQILKLNKGDLVYVTSEWHRNSSGRGFHARAKTITVLEPAPAPGPVAVEAATDELAAVA
Ga0187848_100123362	F025900	AGGAG	VPVSRTRKPSKKKNNLAPSSKEARQKIRRWSFVVQVTKGDTVKTFQPPALTIGNMTSARAAADTILNDIASLDQFKDCKVVVNPKAEETVSLTILNQINGLNEQSRLLTFALKRAVTDVVKQDTSCPCNQIEDEAARQVEFDRHVTELLGKYVMEEQQAMRRQQMIDAGIDPDQVLNNQLPAEQAPAEFQAAPAVEESPAEQVNTDPFPDGEFGKEAA
Ga0187848_100123363	F056263	AGGAG	MSAITVDEASTPWLQRAGLKLRSWQGTGMSTFNAWRQHRDQESLEKALARIIETANGHRAKGLPKGSPAYFSLRDKATAKINTFCKKWNVDPIVIEAEAPALREMYALTIPDKQAPAGIKMFAAFLGGILSLILIGAASGLVNVGHNWVMHLFAHVIH
Ga0187848_100123365	F005296	AGGAGG	MPIWLVWLLPSYEAGFWSALIAGKLRDRGKIRELLVYGRPARTCLPLIDERLRKAAGTPTKSQALVARWVTAGLRWLANTRAMEYAILLGLKRAWPKGQTIYTEVKLCL
Ga0187848_100123366	F009261	AGGAGG	MLLTPSNTGNVAAGVGVGIFAWGAFLKADKIPWIQKLLTTKRKDATLKWIDKNKGISLLGLETVNFGIHGITNPNSVMFALGNTILNIFMLWVYLPFRMASAAKKHTASVLKGVA
Ga0187848_100123367	F100248	GGA	MTKLSILAILSLLFIGVTRIAQFVMALFVIVFFGFTTFELIRTFRQPARRQQAA
Ga0187848_100123368	F085038	GGAGG	MKLIFGFLLFVATVAVTGGLYLIIRKEDDKKCDLQRLYSLPSQIARRVQSLGDYLFNLFGSKPEANDEHPGAEVTAAA