Basic Information | |
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Taxon OID | 3300017935 Open in IMG/M |
Scaffold ID | Ga0187848_10003178 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12305 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (94.12%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011008 | Metagenome / Metatranscriptome | 296 | Y |
F015327 | Metagenome / Metatranscriptome | 255 | Y |
F015623 | Metagenome / Metatranscriptome | 253 | Y |
F037826 | Metagenome / Metatranscriptome | 167 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187848_1000317811 | F015327 | GAGG | MFGGLMEPSALVECAYELMRALKEELAERGTVAPAFILLYDKDCEVLTFSPRLFASAEGKAAVARAFRHRARQTGAHGALMGIDSNCFIPDLTAMREANPRLVQAAAGAGIDALIRSGFGKTSEGLSVTLQTSAFHLLVQQLYARGDNSIVFGELRTLDSREVPMEAAGLFSVYGGQHVTRG |
Ga0187848_1000317813 | F015623 | GAGG | MQQKLITVTLEPDGTSKIDLEGFADNTCGKVMDDFRGGDRVLSERRKPEYYNRGRGQQLQQGNQ |
Ga0187848_1000317817 | F011008 | AGGAG | MKRAKNATLVFCLFVVYCVLLSQGLKAGAVSAFFGALAAVPLTVHIYRRLWPLPPEKDAGERAPRQLARRDGAEGEKENTEYGL |
Ga0187848_100031789 | F037826 | GGAGG | MTLHPLFVAAVLEGFEGTLGEIVGRVESQELDAQLDALRRQVEALRLCIEEPLRRVEGDRTPLET |
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