NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187801_10119562

Scaffold Ga0187801_10119562


Overview

Basic Information
Taxon OID3300017933 Open in IMG/M
Scaffold IDGa0187801_10119562 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1010
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018460Metagenome / Metatranscriptome235Y
F081641Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0187801_101195621F081641AGGAGMKTLDTLPGESNTSIISSIINLVCPQCGGRMSEFQCE
Ga0187801_101195622F018460AGGAGMLRKLISVFTLCLLTFPGLCQTTSKWRIATITEVKAHPVAGEDASDPITYDVSVRVGDTIYLVRYTTPMGELAPKYAAGRDLLVSVGKDTITYNDILGRSLQVPIESQRPVTEPKLSK

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