Scaffold Ga0187877_1059991

Overview

Basic Information

• Taxon OID: 3300017931
• Scaffold ID: Ga0187877_1059991
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1696
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003193	Metagenome / Metatranscriptome	501	Y
F088107	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187877_10599912	F088107	GGA	MAGYSPSSNGQSNLPQSTVRYYDKKFRENLKAQTPFVACSERLDLPMKSGNQYELFMYVPLAANTTQTTEGTVGSGISVNVLTTTATIGEYADYANFSSLSLATAIN
Ga0187877_10599913	F003193	N/A	VENVARELAYRLGESLSGLVRATADGASAVDASVLTQLGATTTSAFTTLSLNQVRNSVQSLAGRSVRPFDEGSKTFAGVIHPFALGDILADNSTNSPIDILKHTPVGLARMEDLISVDLTEMIELPGTGVRFFQTNQVTQTASYKNITGLTALRTYIFGRDGIFSIKLGAQGDTGIGDREWQNIKCELESFIIIYL